Last updated: October 2025
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Papers

Flores-Valle, A., Vishniakou, I., & Seelig, J. D. (2025). Dynamics of glia and neurons regulate homeostatic rest, sleep and feeding behavior in Drosophila. Nature neuroscience, 2025

Ivan Vishniakou, Johannes D. Seelig “Differentiable optimization of the Debye-Wolf integral for light shaping and adaptive optics in two-photon microscopy”, Optics Express, 2023

Ivan Vishniakou, Johannes D. Seelig “Differentiable model-based adaptive optics for two-photon microscopy”, Optics Express, 2021

Ivan Vishniakou, Johannes D. Seelig “Differentiable model-based adaptive optics with transmitted and reflected light”, Optics Express, 2020

Ivan Vishniakou, Johannes D. Seelig “Wavefront correction for adaptive optics with reflected light and deep neural networks”, Optics Express, 2020

Ivan Vishniakou, Paul G. Plöger, Johannes D. Seelig “Virtual reality for animal navigation with camera-based optical flow tracking”, Journal of Neuroscience methods, 2019

Alex Turpin*, Ivan Vishniakou*, Johannes D. Seelig “Light scattering control in transmission and reflection with neural networks”, Optics express, 2018, *equal contribution

Conferences

Ivan Vishniakou, Johannes D. Seelig “Differentiable Optimization for Inverse Problems in Adaptive Optics and Object Tracking” Optica Imaging Congress 2023

Ivan Vishniakou, Johannes D. Seelig “Differentiable Adaptive Optics and Light Shaping in Two-Photon Microscopy” Optica Biophotonics Congress: Optics in the Life Sciences 2023

Ivan Vishniakou, Johannes D. Seelig “Differentiable Physics for Adaptive Optics and Light Shaping” Bonn Conference on Mathematical Life Sciences 2023 Poster

Ivan Vishniakou, Johannes D. Seelig “Differentiable Optics for Wavefront Sensing in Two-photon Fluorescence Microscopy” OSA Imaging and Applied Optics Congress 2022

Ivan Vishniakou, Johannes D. Seelig “Differentiable Model-based Adaptive Optics for Microscopy” OSA Imaging and Applied Optics Congress 2021

Ivan Vishniakou, Johannes D. Seelig “Focusing Through Scattering Materials Using Deep Neural Networks” OSA Imaging and Applied Optics Congress 2020

Ivan Vishniakou, Santosh Thoduka, Paul G. Plöger, Johannes D. Seelig “Versatile virtual reality system for behaviour experiments with high-frequency motion tracking” BonnBrain 2019 Poster

Patents

Method and system for generating a desired light distribution when passing through a diffuser DE102018108628A1

Method and illumination apparatus of the adaptive optics in reflection microscopy WO2021204663A1

Theses

PhD Thesis “Machine learning approaches for adaptive optics in microscopy”, supervised by Prof. Dr. Matthias Hullin, University of Bonn 2022

Master Thesis “Machine learning approaches for light scattering control”, supervised by Prof. Dr. Paul G. Plöger and Prof. Dr. Alexander Asteroth, Bonn-Rhein-Sieg University of Applied Sciences 2019